PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g117790.1
Common NameMTR_3g117790
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 438aa    MW: 50020.8 Da    PI: 6.5332
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g117790.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-11384432148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      +++W+++E++ l  ++k+ G g+Wk+I r      Rt+ ++k++w++++
  Medtr3g117790.1 384 KKKWSQWEEDNLRTGIKLIGEGNWKSILRSYAfDERTEVDLKDKWRNLK 432
                      689******************************99************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.212379436IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-11379433IPR009057Homeodomain-like
SuperFamilySSF466891.35E-11381432IPR009057Homeodomain-like
SMARTSM007171.3E-8383434IPR001005SANT/Myb domain
PfamPF002493.7E-9384432IPR001005SANT/Myb domain
CDDcd116604.19E-15387433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MERLGWCLEF VLGESSIDSE CIKELIKVNY SVTEINNRNM RMIMLKFLED ELLSKASIDE  60
WMLELLEVLE KLLLIDCNDP SNPNPISHAM KSAYFYIAVE CTVKYLEAGG TSNYLQAAVD  120
RIWNRRFQKL EEGSYLLTPK WRLWKTLIND SLVDSQTMLR LASLSNTRKK AIKEVQRFLV  180
DARNNLVGPS FLHSVAAPAQ NQSHNESPME VDKDNGRLKG KASTTIVVVE EMATSTSFSK  240
IDPLPVNEAP KNKCNSVEFE TFANDPVPDS ICMTDIVRSD VAIEETNQEP QMENQSKDAN  300
VPNPQTCLNI NNDEANLTKA TSHHPSLMNP NSSARTHEWD DSIDGLQAGT SRGTSRIRLR  360
SPETKKLSPL KEYEPKKITK RRKKKKWSQW EEDNLRTGIK LIGEGNWKSI LRSYAFDERT  420
EVDLKDKWRN LKRYESQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1379385KRRKKKK
2380385RRKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.136443e-91flower| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU0248760.0CU024876.6 M.truncatula DNA sequence from clone MTH2-144H1 on chromosome 3, complete sequence.
GenBankCU4682640.0CU468264.8 M.truncatula DNA sequence from clone MTH2-46F7 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003604033.10.0myb-like DNA-binding domain protein
TrEMBLG7J8H50.0G7J8H5_MEDTR; Myb-like DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-14TRF-like 5
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]